Deploy PhysioNet MIMIC-III data bases in MongoΒΆ
PhysioNet MIMIC-III is representative of the medical data landscape. So we use it as a sample data source for Data Cafe. We may import the MIMIC-III data into Mongo as multiple data bases or a set of collections in a single data base.
- In different data bases.
mongoimport –db admissions –collection admissionsData –type csv –headerline –file ADMISSIONS_DATA_TABLE.csv
mongoimport –db callout –collection calloutData –type csv –headerline –file CALLOUT_DATA_TABLE.csv
mongoimport –db icuStays –collection icuStaysData –type csv –headerline –file ICUSTAYS_DATA_TABLE.csv
mongoimport –db patients –collection patientsData –type csv –headerline –file PATIENTS_DATA_TABLE.csv
- In a single data base.
mongoimport –db physionet –collection caregivers –type csv –headerline –file CAREGIVERS_DATA_TABLE.csv
mongoimport –db physionet –collection dicddiagnosis –type csv –headerline –file D_ICD_DIAGNOSES_DATA_TABLE.csv
mongoimport –db physionet –collection dlabitems –type csv –headerline –file D_LABITEMS_DATA_TABLE.csv
mongoimport –db physionet –collection datetimeevents –type csv –headerline –file DATETIMEEVENTS_DATA_TABLE.csv
mongoimport –db physionet –collection patients –type csv –headerline –file PATIENTS_DATA_TABLE.csv
mongoimport –db physionet –collection diagnosesicd –type csv –headerline –file DIAGNOSES_ICD_DATA_TABLE.csv